Novel intelligent wavelet filtering of embolic signals from TCD ultrasound

Transcranial Doppler ultrasound can be used to detect emboli in blood flow for predicting stroke. Embolic signals have characteristic transient chirps suitable for wavelet analysis. We have implemented and evaluated the first on-line intelligent wavelet filter to amplify embolic signals building on our previous work in detection. Our intelligent wavelet amplifier uses the matching filter properties of the Daubechies 8th order wavelet to amplify embolic signals. Even the smallest embolic signal is enhanced without affecting the background blood flow signal. We show an increase of over 2db (on average) in embolic signal strength and an improvement in detection of 10-20%

Simulation of Brain Resection for Cavity Segmentation Using Self-Supervised and Semi-Supervised Learning

Resective surgery may be curative for drug-resistant focal epilepsy, but only 40% to 70% of patients achieve seizure freedom after surgery. Retrospective quantitative analysis could elucidate patterns in resected structures and patient outcomes to improve resective surgery. However, the resection cavity must first be segmented on the postoperative MR image. Convolutional neural networks (CNNs) are the state-of-the-art image segmentation technique, but require large amounts of annotated data for training. Annotation of medical images is a time-consuming process requiring highly-trained raters, and often suffering from high inter-rater variability. Self-supervised learning can be used to generate training instances from unlabeled data. We developed an algorithm to simulate resections on preoperative MR images. We curated a new dataset, EPISURG, comprising 431 postoperative and 269 preoperative MR images from 431 patients who underwent resective surgery. In addition to EPISURG, we used three public datasets comprising 1813 preoperative MR images for training. We trained a 3D CNN on artificially resected images created on the fly during training, using images from 1) EPISURG, 2) public datasets and 3) both. To evaluate trained models, we calculate Dice score (DSC) between model segmentations and 200 manual annotations performed by three human raters. The model trained on data with manual annotations obtained a median (interquartile range) DSC of 65.3 (30.6). The DSC of our best-performing model, trained with no manual annotations, is 81.7 (14.2). For comparison, inter-rater agreement between human annotators was 84.0 (9.9). We demonstrate a training method for CNNs using simulated resection cavities that can accurately segment real resection cavities, without manual annotations

Simulation of Brain Resection for Cavity Segmentation Using Self-Supervised and Semi-Supervised Learning

Resective surgery may be curative for drug-resistant focal epilepsy, but only 40% to 70% of patients achieve seizure freedom after surgery. Retrospective quantitative analysis could elucidate patterns in resected structures and patient outcomes to improve resective surgery. However, the resection cavity must first be segmented on the postoperative MR image. Convolutional neural networks (CNNs) are the state-of-the-art image segmentation technique, but require large amounts of annotated data for training. Annotation of medical images is a time-consuming process requiring highly-trained raters, and often suffering from high inter-rater variability. Self-supervised learning can be used to generate training instances from unlabeled data. We developed an algorithm to simulate resections on preoperative MR images. We curated a new dataset, EPISURG, comprising 431 postoperative and 269 preoperative MR images from 431 patients who underwent resective surgery. In addition to EPISURG, we used three public datasets comprising 1813 preoperative MR images for training. We trained a 3D CNN on artificially resected images created on the fly during training, using images from 1) EPISURG, 2) public datasets and 3) both. To evaluate trained models, we calculate Dice score (DSC) between model segmentations and 200 manual annotations performed by three human raters. The model trained on data with manual annotations obtained a median (interquartile range) DSC of 65.3 (30.6). The DSC of our best-performing model, trained with no manual annotations, is 81.7 (14.2). For comparison, inter-rater agreement between human annotators was 84.0 (9.9). We demonstrate a training method for CNNs using simulated resection cavities that can accurately segment real resection cavities, without manual annotations.Comment: 13 pages, 6 figures, accepted at the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) 202

Resective, Ablative and Radiosurgical Interventions for Drug Resistant Mesial Temporal Lobe Epilepsy: A Systematic Review and Meta-Analysis of Outcomes

Objectives: One-third of individuals with focal epilepsy do not achieve seizure freedom despite best medical therapy. Mesial temporal lobe epilepsy (MTLE) is the most common form of drug resistant focal epilepsy. Surgery may lead to long-term seizure remission if the epileptogenic zone can be defined and safely removed or disconnected. We compare published outcomes following open surgical techniques, radiosurgery (SRS), laser interstitial thermal therapy (LITT) and radiofrequency ablation (RF-TC). / Methods: PRISMA systematic review was performed through structured searches of PubMed, Embase and Cochrane databases. Inclusion criteria encompassed studies of MTLE reporting seizure-free outcomes in ≥10 patients with ≥12 months follow-up. Due to variability in open surgical approaches, only comparative studies were included to minimize the risk of bias. Random effects meta-analysis was performed to calculate effects sizes and a pooled estimate of the probability of seizure freedom per person-year. A mixed effects linear regression model was performed to compare effect sizes between interventions. / Results: From 1,801 screened articles, 41 articles were included in the quantitative analysis. Open surgery included anterior temporal lobe resection as well as transcortical and trans-sylvian selective amygdalohippocampectomy. The pooled seizure-free rate per person-year was 0.72 (95% CI 0.66–0.79) with trans-sylvian selective amygdalohippocampectomy, 0.59 (95% CI 0.53–0.65) with LITT, 0.70 (95% CI 0.64–0.77) with anterior temporal lobe resection, 0.60 (95% CI 0.49–0.73) with transcortical selective amygdalohippocampectomy, 0.38 (95% CI 0.14–1.00) with RF-TC and 0.50 (95% CI 0.34–0.73) with SRS. Follow up duration and study sizes were limited with LITT and RF-TC. A mixed-effects linear regression model suggests significant differences between interventions, with LITT, ATLR and SAH demonstrating the largest effects estimates and RF-TC the lowest. / Conclusions: Overall, novel “minimally invasive” approaches are still comparatively less efficacious than open surgery. LITT shows promising seizure effectiveness, however follow-up durations are shorter for minimally invasive approaches so the durability of the outcomes cannot yet be assessed. Secondary outcome measures such as Neurological complications, neuropsychological outcome and interventional morbidity are poorly reported but are important considerations when deciding on first-line treatments

Software tool for visualization of a probabilistic map of the epileptogenic zone from seizure semiologies

Around one third of epilepsies are drug-resistant. For these patients, seizures may be reduced or cured by surgically removing the epileptogenic zone (EZ), which is the portion of the brain giving rise to seizures. If noninvasive data are not sufficiently lateralizing or localizing, the EZ may need to be localized by precise implantation of intracranial electroencephalography (iEEG) electrodes. The choice of iEEG targets is influenced by clinicians' experience and personal knowledge of the literature, which leads to substantial variations in implantation strategies across different epilepsy centers. The clinical diagnostic pathway for surgical planning could be supported and standardized by an objective tool to suggest EZ locations, based on the outcomes of retrospective clinical cases reported in the literature. We present an open-source software tool that presents clinicians with an intuitive and data-driven visualization to infer the location of the symptomatogenic zone, that may overlap with the EZ. The likely EZ is represented as a probabilistic map overlaid on the patient's images, given a list of seizure semiologies observed in that specific patient. We demonstrate a case study on retrospective data from a patient treated in our unit, who underwent resective epilepsy surgery and achieved 1-year seizure freedom after surgery. The resected brain structures identified as EZ location overlapped with the regions highlighted by our tool, demonstrating its potential utility